Tissue Microstructure Imaging
tmi (tissue microstructure imaging) is a python tool for diffusion MRI parameter estimation. It has been designed along with the designer preprocessing package and they are meant to be used in conjunction - designer for image pre-processing and tmi for parameter estimation. tmi includes:
- singe shell diffusion tensor estimation
- multi shell kurtosis tensor estimation
- W tensor parameter extraction
- DKI outlier replacement
- SMI and rotational invariant estimation